Disclaimer: This blog site is intended solely for sharing of information. Comments are warmly welcome, but I make no warranties regarding the quality, content, completeness, suitability, adequacy, sequence, or accuracy of the information.
Wednesday, July 25, 2007
Last week, we had 7 people attended the training class of spatial analysis. Seems a lot of people are interested in this area. Attached please find a 4 years old project I involved about 'Temporal and spatial relationship of ozone and asthma'. One thing amazed me by GIS is geostatistics (maybe only thing, sorry), which can convert values among point, line, and area.
http://gis2.esri.com/library/userconf/proc03/p0911.pdf
Wednesday, July 18, 2007
How to send and receive large files through the Internet
There are several websites can send large files to our friends. One of them is TransferBIGFiles.com, a free service for sending and receiving large files through the Internet. No registration is needed to use the service. View a simple diagram of how the service works.
After you upload the file (up to 1GB), the recipient gets an email with a link to download the file. The file is good for 5 days or 20 downloads, whichever comes first. The optional settings let you add a note to the email, password protect the file and get an email confirmation of the download.
The folks behind the site share their experience in building TransferBigFiles.com in one weekend. Check out the statistics showing the number of transfers, file size, bandwidth and other interesting stats.
http://sascommunity.org/wiki/Main_Page
User feedback to sasCommunity.org continues to be very positive (over 31,000 hits on the main page; over 1200 users and growing!). One of the important features of sasCommunity.org is the ability to organize articles into categories. Categories provide a great way to make sure your pages are found by interested sasCommunity visitors and provide an easy way to navigate between related articles
Tuesday, July 17, 2007
Current Processes of the U.S. Preventive Services Task Force: Refining Evidence-Based Recommendation Development
by Janelle Guirguis-Blake, Ned Calonge, Therese Miller, Albert Siu, Steven Teutsch, Evelyn Whitlock for the U.S. Preventive Services Task Force. Ann Intern Med 2007;147 117-122 Open Access
How to Read the New Recommendation Statement: Methods Update from the U.S.
Preventive Services Task Force
by Mary B. Barton, Therese Miller, Tracy Wolff, Diana Petitti, Michael LeFevre, George Sawaya, Barbara Yawn, Janelle Guirguis-Blake, Ned Calonge, Russell Harris for the U.S. Preventive Services Task Force. Ann Intern Med 2007;147 123-127 Open Access
Monday, July 16, 2007
Nobelist Physicist, teacher, storyteller, bongo player
the hero of physics geeks everywhere!
http://amasci.com/feynman.html
"Science is the belief in the ignorance of the experts” - Richard P. Feynman
More definition of science: http://www.gly.uga.edu/railsback/1122sciencedefns.html
Wednesday, July 11, 2007
Tuesday, July 10, 2007
http://support.sas.com/rnd/app/da/stat/odsgraph/
Graphics are an invaluable tool for data analysis, where one image can summarize pages of output. Graphics reveal patterns, point out differences, and provoke meaningful question about your data. SAS 9.1 now includes an experimental extension to the Output Delivery System (ODS) that provides high-quality graphics along with tabular output for many statistical procedures.
ODS Graphics gives you convenient access to commonly used graphics for a particular analysis. You no longer need to export your results to other graphical tools. With simple ODS commands and procedure options, you can generate the boxplots, scattergrams, and residual plots you need as well as several dozen other types of graphical displays. You can choose from several styles, or you can customize your graphics. You can direct the graphics to destinations such as HTML, RTF, and Postscript.
Wednesday, June 20, 2007
How to DYI a passport photo
- U.S. Passport Photo Requirements: 2 x 2 inches (51 x 51 mm), the height of the head from top of hair to bottom of chin) should between 1 inch to 1 3/8 inches (25 mm - 35 mm).
- The easiest way to crop the US passport photo from a photo is to go to the Travel.State.Gov's "Already have a photo?" webpage, to crop one (a 600 pixels by 600 pixels photo automatically), and paste it on a 4 x 6 (1200 pixels by 1800 pixels) graph file.
- Guidelines for Producing High Quality Photographs for U.S. Travel Documents
- I usually follow the instructions of this website by Trinch to create a passport picture.
- On the US Department of State - Bureau of Consular Affairs website, you can 'Choose Photo', 'Crop Photo', and 'Save Photo' without need any software.
- Persofoto has more editing feature.
- 飞网中国 has a similar app in Chinese
- Visa of photo for China: 1.89 x 1.30 inches (48 x 33 mm).
Friday, June 15, 2007
This link is to a 72-page review from a distinguished European group of authors.
It offers about everything you need to review clinical care of adult diabetic patients, at least insofar as their CV disease goes. Expect to find dozens of systematic tables, several good graphics, and 711
citations!
Friday, June 08, 2007
So what is the evidence so far on the effects of interventions on other types of physical activity? A recent Cochrane review of randomised controlled trials found that trials promoting physical activity in general significantly increased self reported physical activity (standardised mean increase of 0.31, 95% confidence interval 0.12 to 0.50), and fitness (0.40, 0.0.9 to 0.70).3 The review by Ogilvie and colleagues also included non-randomised studies, which, although considered weaker forms of evidence, are necessary to assess the effect of population level interventions such as bike lanes, walking paths, and recreational areas.
One non-randomised community intervention in Odense, Denmark, promoted bicycling through many initiatives and increased the number of bicycle trips by more than 20% over five years.4 At the same time, the number of accidents involving cyclists was 20% lower than in the rest of the country.
Another study found that children who cycled to school were 8% more fit than children who used other modes of transport including walking.5 It concluded that a 10-15 minute session of cycling twice a day would be enough to increase aerobic fitness in children.5
Observational studies have consistently shown that children who walk or cycle to school engage in more physical activity (other than the travel activity) than those who travel by other means.6 7 This extra activity may reflect selection (children who are generally more active choose active transport) or it may be that children who are encouraged to take up active transport go on to engage in other activities. However, because of the lack of cycle lanes in many countries it may be difficult to promote increased cycling for safety reasons.
A weakness in many of the trials of walking interventions is the lack of assessment of health gains; however, epidemiological studies suggest that health benefits of active transport are substantial. The nurses health study found that women who increased both walking distance and speed had a lower risk of cardiovascular disease, type 2 diabetes , and all cause mortality.8 9 The risk in the upper quintile of walking was around half that seen in the sedentary group. Similarly, another study found a 30% lower mortality rate in participants who cycled to work than in non-cyclists after adjusting for general physical activity level, socioeconomic background, and smoking.
Ogilvie and colleagues' study shows that interventions can increase the amount of walking. It has not yet been proved that the lower rates of disease and mortality seen in people who walk is caused by walking itself, but even this low intensity type of exercise probably improves metabolic control and other health parameters. The challenge now is to make politicians work for an environment that promotes walking, and to call on doctors to encourage patients to walk, especially those with disorders such as hypertension, metabolic syndrome, or raised fasting insulin.
Lars Bo Andersen, professor Norwegian School of Sport Sciences, Department of Sports Medicine, Box 4014, 0806, Oslo, Norway
Wednesday, April 25, 2007
Ggobi: the data visualization system.
GGobi is an open source visualization program for exploring high-dimensional data. It provides highly dynamic and interactive graphics such as tours, as well as familiar graphics such as the scatterplot, barchart and parallel coordinates plots. Plots are interactive and linked with brushing and identification.
Friday, April 20, 2007
Bootstrap sampling & complex survey for 2007-04-20 Presentation
Wednesday, March 28, 2007
A bug of SAS?
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Tuesday, March 06, 2007
Free articles on PERIPHERAL ARTERIAL DISEASE on Ann Intern Med
IN THE CLINIC
Our third issue on
PERIPHERAL ARTERIAL DISEASE
is available at:
www.annals.org/cgi/content/abstract/146/5/ITC3-1
Find Out More at:
FW: Philippine Dept of Health Endorses Medicinal Plant Bitter Gourd for Diabetes
| Ampalaya can cure diabetes, says DoH |
| Tuesday, March 6, 2007 |
The efficacy of ampalaya or bitter gourd in treating diabetes was officially announced by the Department of Health (DoH) yesterday. It cited a 10-year study that found out that the vegetable can effectively regulate blood sugar in the same way as a regular anti-diabetes drug. Results of the study conducted by the Philippine Council for Health Research and Development (PCHRD) elevated the ampalaya from a mere nutritional supplement to a real medicine. The study has been certified by the Philippine Institute of Traditional and Alternative Health Care (PITAHC). "We compared ampalaya leaves with an anti-diabetes drug, and we found out that ampalaya has the same effect on the patient. It means the action of ampalaya on blood sugar is equivalent to the action of the medicine," Dr. Cirilo Galindez, PITAHC director general, said. "According to the study, it even has more blood sugar lowering effect," DoH Undersecretary Jade del Mundo said. The study revealed that a 100 milligram per kilo dose per day is comparable to 2.5 milligrams of the anti-diabetes drug Glibenclamide taken twice per day, Del Mundo said. In 2003, ampalaya was omitted from the list of government-recognized medicinal plants, and was demoted from being a scientifically validated medicinal plant to folkloric. Former Health Secretary Dr. Jaime Galvez Tan said this happened because previous scientific studies were not enough to support the medicinal purposes of ampalaya. The DoH has issued an order reinstating ampalaya as an effective medicine for Type 2 diabetes or diabetes mellitus. Other plants recognized by the government as medicinal and marketed locally include lagundi (for fever, asthma, and headache), sambong (for gaseous stomach, fever, headache, and aromatic bath), acapulco (as wound wash and for itch), yerba buena (for cough, toothache, dizziness, fainting, hysteria, and arthritis), bayabas (guava), and "tsaang gubat." |
Tuesday, February 20, 2007
Updated guidelines advise focusing on women's lifetime heart risk
http://www.americanheart.org/presenter.jhtml?identifier=3045524
Highlights of the changes include:
- Recommended lifestyle changes to help manage blood pressure include weight control, increased physical activity, alcohol moderation, sodium restriction, and an emphasis on eating fresh fruits, vegetables and low-fat dairy products.
- Besides advising women to quit smoking, the 2007 guidelines recommend counseling, nicotine replacement or other forms of smoking cessation therapy.
- Physical activity recommendations for women who need to lose weight or sustain weight loss have been added – minimum of 60–-90 minutes of moderate-intensity activity (e.g., brisk walking) on most, and preferably all, days of the week.
- The guidelines now encourage all women to reduce saturated fats intake to less than 7 percent of calories if possible.
- Specific guidance on omega-3 fatty acid intake and supplementation recommends eating oily fish at least twice a week, and consider taking a capsule supplement of 850–1000 mg of EPA (eicosapentaenoic acid) and DHA (docosahexaenoic acid) in women with heart disease, two to four grams for women with high triglycerides.
- Hormone replacement therapy and selective estrogen receptor modulators (SERMs) are not recommended to prevent heart disease in women.
- Antioxidant supplements (such as vitamin E, C and beta-carotene) should not be used for primary or secondary prevention of CVD.
- Folic acid should not be used to prevent CVD – a change from the 2004 guidelines that did recommend it be considered for use in certain high-risk women.
- Routine low dose aspirin therapy may be considered in women age 65 or older regardless of CVD risk status, if benefits are likely to outweigh other risks. (Previous guidelines did not recommend aspirin in lower risk or healthy women.)
- The upper dosage of aspirin for high-risk women increases to 325 mg per day rather than 162 mg. This brings the women’s guidelines up to date with other recently published guidelines.
Consider reducing LDL cholesterol to less than 70 mg/dL in very high-risk women with heart disease (which may require a combination of cholesterol-lowering drugs).
Tuesday, February 13, 2007
FTP site for big files
site to upload and download files.
Shortcut to: http://www.transferbigfiles.com/
Monday, February 12, 2007
Potential to create a genetic test to predict diabetes
Subject: Potential to create a genetic test to predict diabetes
| STEWART PATERSON | February 12 2007 |
An international team of scientists has made a breakthrough which could help halt the growth of diabetes.
Researchers from Britain and Canada have identified the gene that causes diabetes, which means potential sufferers could be tested to assess their risk of developing the disease.
It is hoped the discovery will also help develop new treatments for adult onset, or type 2 diabetes, which is one of the most common illnesses among middle aged and older people in the UK.
The research, published online in the science magazine, Nature, is the first time the genetic make-up of any disease has been mapped in such detail.
If adult diabetes is not properly managed, patients can suffer severe complications, such as blindness, amputations and kidney disease, and are at far higher risk of developing heart disease or suffering a stroke.
The researchers at McGill University, Montreal, and Imperial College London, believe their findings explain up to 70% of the genetic background of type 2 diabetes.
|
In addition, one of the genetic mutations they detected may further explain the causes behind the disease, potentially leading to a new therapy.
Lead researcher Dr Constantin Polychronakos, of McGill University, said: "The rapidly increasing prevalence of type 2 diabetes is believed to be due to environmental factors, such as increased availability of food and decreased opportunity and motivation for physical activity, acting on genetically susceptible individuals."
The study revealed people with the disease have a mutation in a particular zinc transporter known as SLC30A8, which is involved in regulating insulin secretion.
Type 2 diabetes is caused by a deficiency in insulin and the researchers believe it may be possible to treat it by fixing this transporter.
Professor Philippe Froguel, of Imperial College London, said: "The two major reasons why people develop type 2 diabetes are obesity and a family link. Our new findings mean we can create a good genetic test to predict people's risk of developing this type of diabetes.
"If we can tell someone their genetics mean they are pre-disposed towards type 2 diabetes, they will be much more motivated to change things such as their diet to reduce their chances of developing the disorder."
The scientists reached their conclusions after comparing the genetic makeup of 700 people with type 2 diabetes and a family history of the condition, with 700 controls. They looked at mutations in the building blocks, called nucleotides, which make up DNA.
There are mutations in about one in every 600 nucleotides and the scientists examined more than 392,000 of these to find the ones specific to type 2 diabetes.
Professor David Balding, epidemiologist at Imperial College, said: "Our research shows this technology can generate big leaps forward. The task now is to study the genes identified in our work more intensively, to understand more fully the disease processes involved, devise therapies for those affected and to try to prevent future cases."
© All rights reserved. Reproduction in whole or in part without permission is prohibited.
Tuesday, February 06, 2007
Obesity worse than inactivity
|
| |||
| NEW YORK (Reuters) -- Although obesity and lack of physical activity both raise the risk of type 2 diabetes in women, obesity appears to be the more important factor, researchers report in the journal Diabetes Care. Dr. Frank Hu of the Harvard School of Public Health, Boston, Massachusetts, and colleagues note that the relative contribution of obesity and inactivity to the risk of developing type 2 diabetes remains controversial. To investigate further, the researchers monitored 68,907 women taking part in the Nurses' Health Study, a large ongoing study that is evaluating women's health over time. The women in the current trial had no history of diabetes, cardiovascular disease or cancer at study entry. During 16 years of follow-up, there were 4,030 incident cases of type 2 diabetes. After allowing for age, smoking, and other diabetes-associated factors, the risk of type 2 diabetes increased progressively with increasing body mass index (BMI - the ratio of height to weight often used to determine whether someone is overweight or too thin). The risk also increased with waist circumference, and decreased with physical activity levels. Using women who had a healthy weight (BMI of less than 25) and were physically active as the reference group, the relative risks of type 2 diabetes were 16.75 in women with a BMI of 30 or more and were inactive. The corresponding risk in obese women who were active was 10.74. In women who were lean but inactive, the relative risk was 2.08. Although both variables were significant predictors of type 2 diabetes, the researchers found that the association for waist circumference was substantially stronger than that for physical inactivity. They researchers conclude that "the magnitude of risk contributed by obesity is much greater than that imparted by lack of physical activity," and therefore "weight loss and maintenance of healthy weight should be emphasized as an eventual goal to prevent the onset of type 2 diabetes." Copyright 2007 Reuters. All rights reserved.This material may not be published, broadcast, rewritten, or redistributed. |
Monday, October 16, 2006
Stephen's Guide to the Logical Fallacies
by Stephen Downes
Table of Contents
Welcome
- False Dilemma: two choices are given when in fact there are three options
- From Ignorance: because something is not known to be true, it is assumed to be false
- Slippery Slope: a series of increasingly unacceptable consequences is drawn
- Complex Question: two unrelated points are conjoined as a single proposition
- Appeal to Force: the reader is persuaded to agree by force
- Appeal to Pity: the reader is persuaded to agree by sympathy
- Consequences: the reader is warned of unacceptable consequences
- Prejudicial Language: value or moral goodness is attached to believing the author
- Popularity: a proposition is argued to be true because it is widely held to be true
- Attacking the Person:
- the person's character is attacked
- the person's circumstances are noted
- the person does not practise what is preached
- Appeal to Authority:
- the authority is not an expert in the field
- experts in the field disagree
- the authority was joking, drunk, or in some other way not being serious
- Anonymous Authority: the authority in question is not named
- Style Over Substance: the manner in which an argument (or arguer) is presented is felt to affect the truth of the conclusion
- Hasty Generalization: the sample is too small to support an inductive generalization about a population
- Unrepresentative Sample: the sample is unrepresentative of the sample as a whole
- False Analogy: the two objects or events being compared are relevantly dissimilar
- Slothful Induction: the conclusion of a strong inductive argument is denied despite the evidence to the contrary
- Fallacy of Exclusion: evidence which would change the outcome of an inductive argument is excluded from consideration
- Accident: a generalization is applied when circumstances suggest that there should be an exception
- Converse Accident : an exception is applied in circumstances where a generalization should apply
- Post Hoc: because one thing follows another, it is held to cause the other
- Joint effect: one thing is held to cause another when in fact they are both the joint effects of an underlying cause
- Insignificant: one thing is held to cause another, and it does, but it is insignificant compared to other causes of the effect
- Wrong Direction: the direction between cause and effect is reversed
- Complex Cause: the cause identified is only a part of the entire cause of the effect
- Begging the Question: the truth of the conclusion is assumed by the premises
- Irrelevant Conclusion: an argument in defense of one conclusion instead proves a different conclusion
- Straw Man: the author attacks an argument different from (and weaker than) the opposition's best argument
- Equivocation: the same term is used with two different meanings
- Amphiboly: the structure of a sentence allows two different interpretations
- Accent: the emphasis on a word or phrase suggests a meaning contrary to what the sentence actually says
- Composition: because the attributes of the parts of a whole have a certain property, it is argued that the whole has that property
- Division: because the whole has a certain property, it is argued that the parts have that property
- Affirming the Consequent: any argument of the form: If A then B, B, therefore A
- Denying the Antecedent: any argument of the form: If A then B, Not A, thus Not B
- Inconsistency: asserting that contrary or contradictory statements are both true
- Fallacy of Four Terms: a syllogism has four terms
- Undistributed Middle: two separate categories are said to be connected because they share a common property
- Illicit Major: the predicate of the conclusion talks about all of something, but the premises only mention some cases of the term in the predicate
- Illicit Minor: the subject of the conclusion talks about all of something, but the premises only mention some cases of the term in the subject
- Fallacy of Exclusive Premises: a syllogism has two negative premises
- Fallacy of Drawing an Affirmative Conclusion From a Negative Premise: as the name implies
- Existential Fallacy: a particular conclusion is drawn from universal premises
- Subverted Support (The phenomenon being explained doesn't exist)
- Non-support (Evidence for the phenomenon being explained is biased)
- Untestability (The theory which explains cannot be tested)
- Limited Scope (The theory which explains can only explain one thing)
- Limited Depth (The theory which explains does not appeal to underlying causes)
- Too Broad (The definition includes items which should not be included)
- Too Narrow (The definition does not include all the items which shouls be included)
- Failure to Elucidate (The definition is more difficult to understand than the word or concept being defined)
- Circular Definition (The definition includes the term being defined as a part of the definition)
- Conflicting Conditions (The definition is self-contradictory)